
- PHYML v2.4.4 -

. Sequence file : [trio2.phy]

. Model of nucleotides substitution : GTR

. Initial tree : [BIONJ]

. Number of taxa : 36


. Likelihood : loglk = -125.92293

. Discrete gamma model : No

. Nucleotides frequencies :

  - f(A)= 0.00000
  - f(C)= 0.53889
  - f(G)= 0.46111
  - f(T)= 0.00000

. GTR relative rate parameters : 

A <-> C    1.00000
A <-> G    1.00000
A <-> T    1.00000
C <-> G    1.00000
C <-> T    1.00000
G <-> T   1.0 (fixed)


. Instantaneous rate matrix : 

[A---------C---------G---------T------]
-2.01217   1.08434   0.92784   0.00000  
 0.00000  -0.92784   0.92784   0.00000  
 0.00000   1.08434  -1.08434   0.00000  
 0.00000   1.08434   0.92784  -2.01217  

eg., the instantaneous rate of change from 'C' to 'A' is  0.00000 x  1.00000 =  0.00000

. Time used 0h0m8s

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