SPAdes
Genome assembler for single-cell and isolates data sets
Version: see VERSION

Developed in Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University.
Developed in Algorithmic Biology Lab of St. Petersburg Academic University of the Russian Academy of Sciences.

Current SPAdes contributors:

    Dmitry Antipov,
    Anton Bankevich,
    Elena Bushmanova,
    Vasisliy Ershov,
    Yuriy Gorshkov,
    Alexey Gurevich,
    Anton Korobeynikov,
    Sergey Nurk,
    Andrey Prjibelski,
    Ivan Tolstoganov,
    Alla Lapidus and
    Pavel Pevzner

Also contributed:

    Max Alekseyev,
    Mikhail Dvorkin,
    Alexander Kulikov,
    Valery Lesin,
    Dmitriy Meleshko,
    Sergey Nikolenko,
    Son Pham,
    Alexey Pyshkin,
    Yana Safonova,
    Vladislav Saveliev,
    Alexander Sirotkin,
    Yakov Sirotkin,
    Artem Tarasov,
    Glenn Tesler,
    Irina Vasilinetc,
    Nikolay Vyahhi

Installation instructions and manual can be found on the website:
http://cab.spbu.ru/software/spades/

Address for communication: spades.support@cab.spbu.ru

References:

Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin,
Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler,
Max A. Alekseyev, and Pavel A. Pevzner. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.
Journal of Computational Biology 19(5) (2012), 455-477. doi:10.1089/cmb.2012.0021

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov,
Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin,
Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken,
Scott Clingenpeel, Tanja Woyke, Glenn Tesler, Max Alekseyev, and Pavel Pevzner.
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. Lecture Notes
in Computer Science 7821 (2013), pp. 158-170. doi:10.1007/978-3-642-37195-0_13

